diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md new file mode 100644 index 0000000..8b4ddb1 --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -0,0 +1,11 @@ +### Overview + +N/A + +### Change Details (Specifics) + +N/A + +### Related Ticket(s) + +N/A diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 89fce6b..6d66569 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -12,7 +12,7 @@ on: type: boolean description: fail the build if vulnerabilities are found required: true - default: false + default: true jobs: build: name: Build Image @@ -102,4 +102,4 @@ jobs: with: status: ${{ job.status }} steps: ${{ toJson(steps) }} - if: always() \ No newline at end of file + if: always() diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml new file mode 100644 index 0000000..9f60b2e --- /dev/null +++ b/.github/workflows/test.yml @@ -0,0 +1,39 @@ +name: Test + +on: + workflow_dispatch: + push: + branches: + - "*.*.*" + - "main" + - "master" + pull_request: + branches: + - "*" + +permissions: + contents: read + +jobs: + test: + name: Test Changes + runs-on: ubuntu-latest + steps: + - name: Checkout Repository + uses: actions/checkout@v4 + + - name: Setup Node + uses: actions/setup-node@v4 + with: + node-version: "22.x" + cache: "npm" + + - name: Install Dependencies + run: npm install + + - name: Run Vitest + run: npm run test:ci + + - name: Coveralls GitHub Action + uses: coverallsapp/github-action@v2 + continue-on-error: true diff --git a/.gitignore b/.gitignore index ae1cefc..627f97a 100644 --- a/.gitignore +++ b/.gitignore @@ -5,6 +5,7 @@ /build # misc +coverage .DS_Store .env .env.local diff --git a/Dockerfile b/Dockerfile index c3aadef..b7a6c15 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,10 +1,12 @@ -FROM node:22-alpine3.20 AS fnl_base_image +FROM node:22-alpine3.23 AS fnl_base_image ENV PORT 8081 ENV NODE_ENV production WORKDIR /usr/src/app +RUN npm install -g npm@latest + COPY package*.json ./ RUN npm ci --only=production diff --git a/README.md b/README.md index 3c987d7..c9776e2 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,7 @@ -# CCDC Backend +# C3DC Rest Backend + +[![Test](https://github.com/CBIIT/INS-REST-WebService/actions/workflows/test.yml/badge.svg)](https://github.com/CBIIT/INS-REST-WebService/actions/workflows/test.yml) +[![Coverage Status](https://coveralls.io/repos/github/CBIIT/INS-REST-WebService/badge.svg?branch=copilot/sub-pr-39)](https://coveralls.io/github/CBIIT/INS-REST-WebService?branch=main) ## Table of Contents diff --git a/Services/queryGenerator.js b/Services/queryGenerator.js index 2d4e33a..5cf3f53 100644 --- a/Services/queryGenerator.js +++ b/Services/queryGenerator.js @@ -169,41 +169,30 @@ queryGenerator.getFiltersClause = (filters) => { return clause; } -queryGenerator.getTextSearchClause = (searchText) => { - const clause = { - 'bool': { - 'should': [] - } - }; - const strArr = searchText.trim().split(' '); - const result = strArr.map( +queryGenerator.getTextSearchConditions = (searchText) => { + const conditions = []; + const searchTerms = searchText.trim().split(' ').map( term => term.trim() ).filter( term => term.length > 2 ); - const keywords = result.length === 0 ? '' : result.join(' '); - - // No search terms, so return null - if (keywords == '') { - return null; - } - - const termArr = keywords.split(' ').map((t) => t.trim()); - const uniqueTermArr = termArr.filter((t, idx) => { - return termArr.indexOf(t) === idx; + const uniqueSearchTerms = searchTerms.filter((term, idx) => { + return searchTerms.indexOf(term) === idx; }); - uniqueTermArr.filter((term) => term.trim() != '').forEach((term) => { - let dsl = {}; - let searchTerm = term.trim(); - dsl.multi_match = { - 'query': searchTerm, - 'fields': DATASET_FIELDS.map((field) => `${field}.search`), + // Add a search condition for finding each term in any of the dataset fields + uniqueSearchTerms.forEach((term) => { + const dsl = { + 'multi_match': { + 'query': term, + 'fields': DATASET_FIELDS.map((field) => `${field}.search`), + } }; - clause.bool.should.push(dsl); + + conditions.push(dsl); }); - return clause; + return conditions; }; queryGenerator.getSearchQueryV2 = (searchText, filters, options, returnFields) => { @@ -214,7 +203,7 @@ queryGenerator.getSearchQueryV2 = (searchText, filters, options, returnFields) = }, }; const filtersClause = queryGenerator.getFiltersClause(filters); - const textSearchClause = queryGenerator.getTextSearchClause(searchText); + const textSearchClause = queryGenerator.getTextSearchConditions(searchText); body['_source'] = returnFields; @@ -228,7 +217,7 @@ queryGenerator.getSearchQueryV2 = (searchText, filters, options, returnFields) = } if (textSearchClause != null) { - compoundQuery.bool.must.push(textSearchClause); + compoundQuery.bool.must = textSearchClause; } if (compoundQuery.bool.must.length > 0 || compoundQuery.bool.filter) { @@ -244,10 +233,10 @@ queryGenerator.getSearchQueryV2 = (searchText, filters, options, returnFields) = // body.aggs = agg; // Add sort parameters if (options?.sort) { - body.sort = []; - const tmp = {}; - tmp[options.sort.k] = options.sort.v; - body.sort.push(tmp); + body.sort = []; // Initialize a list of sort clauses + const sortClause = {}; + sortClause[options.sort.k] = options.sort.v; // In our API, "k" is the property name, and "v" is the direction + body.sort.push(sortClause); } body.highlight = { @@ -305,17 +294,17 @@ queryGenerator.getDatasetFiltersQuery = (searchText, searchFilters, excludedFiel ([filterName]) => filterName != excludedField ) )); - const textSearchClause = queryGenerator.getTextSearchClause(searchText); + const textSearchClause = queryGenerator.getTextSearchConditions(searchText); if (filtersClause != null) { compoundQuery.bool['filter'] = filtersClause; } if (textSearchClause != null) { - compoundQuery.bool.must.push(textSearchClause); + compoundQuery.bool.must = textSearchClause; } - if (compoundQuery.bool.must.length > 0) { + if (compoundQuery.bool.must.length > 0 || compoundQuery.bool.filter) { body.query = compoundQuery; } diff --git a/Utils/index.test.js b/Utils/index.test.js new file mode 100644 index 0000000..67f59df --- /dev/null +++ b/Utils/index.test.js @@ -0,0 +1,79 @@ +import { describe, it, expect } from 'vitest'; +const utils = require('./index.js'); + +describe('getSearchableText', () => { + it('should return filtered text with terms longer than 2 characters', () => { + const result = utils.getSearchableText('hello world test'); + expect(result).toBe('hello world test'); + }); + + it('should filter out terms with 2 or fewer characters', () => { + const result = utils.getSearchableText('hello to a world'); + expect(result).toBe('hello world'); + }); + + it('should handle extra spaces between words', () => { + const result = utils.getSearchableText('hello world test'); + expect(result).toBe('hello world test'); + }); + + it('should handle leading and trailing spaces', () => { + const result = utils.getSearchableText(' hello world '); + expect(result).toBe('hello world'); + }); + + it('should return empty string when all terms are 2 or fewer characters', () => { + const result = utils.getSearchableText('a to in at'); + expect(result).toBe(''); + }); + + it('should return empty string for empty input', () => { + const result = utils.getSearchableText(''); + expect(result).toBe(''); + }); + + it('should return empty string for whitespace only input', () => { + const result = utils.getSearchableText(' '); + expect(result).toBe(''); + }); + + it('should handle single word longer than 2 characters', () => { + const result = utils.getSearchableText('test'); + expect(result).toBe('test'); + }); + + it('should filter out single word with 2 or fewer characters', () => { + const result = utils.getSearchableText('at'); + expect(result).toBe(''); + }); + + it('should handle mixed case text', () => { + const result = utils.getSearchableText('Hello WORLD Test'); + expect(result).toBe('Hello WORLD Test'); + }); + + it('should preserve special characters in terms longer than 2 characters', () => { + const result = utils.getSearchableText('test-123 data@2024'); + expect(result).toBe('test-123 data@2024'); + }); + + it('should handle terms with exactly 3 characters', () => { + const result = utils.getSearchableText('the cat dog'); + expect(result).toBe('the cat dog'); + }); + + it('should filter terms with exactly 2 characters', () => { + const result = utils.getSearchableText('in on at to my cat'); + expect(result).toBe('cat'); + }); + + it('should filter terms with exactly 1 character', () => { + const result = utils.getSearchableText('a b c test hello'); + expect(result).toBe('test hello'); + }); + + it('should handle complex mixed input', () => { + const result = utils.getSearchableText(' a hello to world in test '); + expect(result).toBe('hello world test'); + }); +}); diff --git a/package-lock.json b/package-lock.json index 4e0d190..08ba19b 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,12 +1,12 @@ { - "name": "ccdc", - "version": "1.0.0", + "name": "ins-rest-webservice", + "version": "3.2.0", "lockfileVersion": 3, "requires": true, "packages": { "": { - "name": "ccdc", 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|| ^22.0.0 || >=24.0.0", + "@vitest/browser-playwright": "4.0.15", + "@vitest/browser-preview": "4.0.15", + "@vitest/browser-webdriverio": "4.0.15", + "@vitest/ui": "4.0.15", + "happy-dom": "*", + "jsdom": "*" + }, + "peerDependenciesMeta": { + "@edge-runtime/vm": { + "optional": true + }, + "@opentelemetry/api": { + "optional": true + }, + "@types/node": { + "optional": true + }, + "@vitest/browser-playwright": { + "optional": true + }, + "@vitest/browser-preview": { + "optional": true + }, + "@vitest/browser-webdriverio": { + "optional": true + }, + "@vitest/ui": { + "optional": true + }, + "happy-dom": { + "optional": true + }, + "jsdom": { + "optional": true + } + } + }, + "node_modules/vitest/node_modules/picomatch": { + "version": "4.0.3", + "resolved": "https://registry.npmjs.org/picomatch/-/picomatch-4.0.3.tgz", + "integrity": "sha512-5gTmgEY/sqK6gFXLIsQNH19lWb4ebPDLA4SdLP7dsWkIXHWlG66oPuVvXSGFPppYZz8ZDZq0dYYrbHfBCVUb1Q==", + "dev": true, + "license": "MIT", + "engines": { + "node": ">=12" + }, + "funding": { + "url": "https://github.com/sponsors/jonschlinkert" + } + }, + "node_modules/why-is-node-running": { + "version": "2.3.0", + "resolved": "https://registry.npmjs.org/why-is-node-running/-/why-is-node-running-2.3.0.tgz", + "integrity": "sha512-hUrmaWBdVDcxvYqnyh09zunKzROWjbZTiNy8dBEjkS7ehEDQibXJ7XvlmtbwuTclUiIyN+CyXQD4Vmko8fNm8w==", + "dev": true, + "license": "MIT", + "dependencies": { + "siginfo": "^2.0.0", + "stackback": "0.0.2" + }, + "bin": { + "why-is-node-running": "cli.js" + }, + "engines": { + "node": ">=8" + } + }, "node_modules/winston": { "version": "3.14.2", "resolved": "https://registry.npmjs.org/winston/-/winston-3.14.2.tgz", diff --git a/package.json b/package.json index c8f32a0..9f77038 100644 --- a/package.json +++ b/package.json @@ -1,11 +1,12 @@ { - "name": "ccdc", - "version": "1.0.0", + "name": "ins-rest-webservice", + "version": "3.2.0", "description": "Childhood Cancer Data Catalog", "main": "app.js", "scripts": { "start": "nodemon app.js", - "test": "echo \"Error: no test specified\" && exit 1" + "test": "vitest", + "test:ci": "TZ=UTC CI=true vitest --reporter verbose --coverage --maxConcurrency=2" }, "author": "Wei Yu", "license": "ISC", @@ -26,5 +27,9 @@ "nodemon": "^3.1.4", "path-to-regexp": "^0.1.12", "winston": "^3.14.2" + }, + "devDependencies": { + "@vitest/coverage-v8": "^4.0.15", + "vitest": "^4.0.15" } } diff --git a/vite.config.js b/vite.config.js new file mode 100644 index 0000000..831f520 --- /dev/null +++ b/vite.config.js @@ -0,0 +1,15 @@ +import { defineConfig } from "vite"; + +export default defineConfig({ + plugins: [], + test: { + globals: true, + environment: "node", + coverage: { + provider: "v8", + reporter: ["lcov", "json", "html"], + enabled: true, + }, + testTimeout: 10_000, + }, +});