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plot_sedcore_SETTINGS.m
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152 lines (151 loc) · 8.94 KB
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% plot_sedcore_settings
%
% ***********************************************************************
% *** DEFAULT PARAMETER SETTINGS FOR sedcore DATA PLOTTING **************
% ***********************************************************************
%
% Edit this file directly for additional user settings:
% NOTE: CONFIGURATION PATHS *MUST* BE CORRECT
%
% ** configure paths and experiment
% par_pathin = 'cgenie_output'; relative location results directories
% par_pathout = 'PLOTS'; relative location for output
% par_pathdata = 'DATA'; relative location of data
% ** main (most commonly used) parameters
% par_expduration = 50.0; Experiment run duration in kyr
% -> used to define age of stratigraphic
% marker layer
% plot_nratio = 1; Ratio of points to points plotted
% (for sub-sampling of data)
% opt_relreflevel = true; Plot relative to a reference level?
% If false => stratigraphic height is plotted
% relative to the surface
% ** axis controls
% axis_Cmin = 0.0; Bulk concentration min plotted value (wt%)
% axis_Cmax = 0.0; Bulk concentration max plotted value (wt%)
% => set both equal for autoscaling
% axis_d13Cmin = 0.0; d13C min plotted value (o/oo)
% axis_d13Cmax = 0.0; d13C max plotted value (o/oo)
% => set both equal for autoscaling
% axis_SRmin = 0.0; Sed rate min plotted value (cm kyr-1)
% axis_SRmax = 0.0; Sed rate max plotted value (cm kyr-1)
% => set both equal for autoscaling
% axis_agemodelmin = 0.0; Age model min plotted value (kyr or cm)
% axis_agemodelmax = 0.0; Age model max plotted value (kyr or cm)
% => set both equal for autoscaling
% axis_dy = 0.0; Tick spacing on y-axis (kyr or cm)
% => set to zero for automatic spacing
% axis_data_yoff = 0.0; Atrificial offset aplied to data y-axis ...
% ** additional data plotting controls
% axis_data1min = 0.0; min plotted value of 1st optional data set
% axis_data1max = 0.0; max plotted value of 1st optional data set
% axis_data2min = 0.0; min plotted value of 2nd optional data set
% axis_data2max = 0.0; max plotted value of 1st optional data set
% => set both equal for autoscaling
% plot_data1_title = ''; title for 1st optional data set
% plot_data1_units = ''; units for 1st optional data set
% plot_data2_title = ''; title for 2nd optional data set
% plot_data2_units = ''; units for 2nd optional data set
% plot_data1_ts_n = 3; data column of time-sereis #1 to be plotted
% plot_data2_ts_n = 3; data column of time-sereis #2 to be plotted
% ** overlay data
% overlaydatacaco3_file = ''; wt% CaCO3 DATA overlay
% overlaydatacaco3d13c_file = ''; d13C CaCO3 DATA overlay
% overlaydata1_file = ''; #1 DATA overlay
% overlaydata2_file = ''; #2 DATA overlay
% ** plotting refinements and other options
% axis_Cthresh = 0.1; CaCO3 wt% threshold for masking out
% carbonate related data
% opt_ashagemodel=false; Use (internally-generated) ash age model?
% If also not det age => CaCO3 age model
% If BOTH => constant det accumulation model
% opt_detagemodel=false; Use (internally-generated) det age model?
% If also not ash age => CaCO3 age model
% If BOTH => constant det accumulation model
% par_ref_coln = 90; Number of numerically tagged levels
% par_ashmaxn=1 Number of ash maximum to be used [1-3]
% par_SR_mean_default=1.0;Default sedimentation rate (cm kyr-1)
% plot_axislabel_prec=3; Precision used for axis labelling
% plot_datasize = 20.0; Data point size
% plot_rSR = 0.85; Scaling for bulk wt% color fill bar height
% (values <1.0 expand, >1.0 contract height)
% plot_dscrsz = 0.75; Fraction of screen size of plotting window
% ** alternative plotting
% plot_format_old = 'y'; Choose 'old' style plotting?
% ('new' plotting ('y') requires additional
% Windows library resources)
% plot_format = ''; Format of 'new' syle plot (if above is 'y')
% options: 'jpg', 'png', 'eps'
% 'pngT' adds transparency to png
% opt_fatplot=false; plot fatter panels (if no time-series)
% opt_minplot=false; minimal plot (no strat)
% str_plot_title = ''; Plot title
% (otherwise automatically generated)
% str_plot_yaxis = ''; alternative y-axis label
% (otherwise automatically generated)
%
% ***********************************************************************
% *********************************************************************** %
% *** USER SETTINGS ***************************************************** %
% *********************************************************************** %
%
% PARAMATER % DEFAULT BRIEF DESCRIPTION [SEE ABOVE]
% *** configure paths and experiment ***
par_pathin = 'cgenie_output'; % [ 'cgenie_output']
par_pathout = 'PLOTS';
par_pathdata = 'DATA';
% *** main (most commonly used) parameters ***
par_expduration = 50.0; % [ 50.0] EXPERIMENT RUN DURATION (KYR)
plot_nratio = 1; % [ 1] DATA RESAMPLING RATIO FOR PLOTTIUNG
opt_relreflevel = true; % [ true] PLOT RELATIVE TO REFERENCE LEVEL
% *** axis controls ***
axis_Cmin = 0.0; % [ 0.0] BULK CONCENTRATION PLOTTING MIN [%]
axis_Cmax = 0.0; % [ 0.0] BULK CONCENTRATION PLOTTING MAX [%]
axis_d13Cmin = 0.0; % [ 0.0] CaCO3 (d13C) PLOTTING MIN [o/oo]
axis_d13Cmax = 0.0; % [ 0.0] CaCO3 (d13C) PLOTTING MAX [o/oo]
axis_SRmin = 0.0; % [ 0.0] SED RATE PLOTTING MIN (cm kyr-1)
axis_SRmax = 0.0; % [ 0.0] SED RATE PLOTTING MAX (cm kyr-1)
axis_agemodelmin = 0.0; % [ 0.0] AGE MODEL MIN (kyr or cm)
axis_agemodelmax = 0.0; % [ 0.0] AGE MODEL MAX (kyr or cm)
axis_dy = 0.0; % [ 0.0] INCREMENT OF y AXIS (cm/kyr)
axis_data_yoff = 0; % [ 0.0] OFFSET APPLIED TO DATA y AXIS SCALE
% *** additional data plotting controls ***
axis_data1min = 0.0; % [ ''] DATA #1 PLOTTING MINIMUM
axis_data1max = 0.0; % [ ''] DATA #1 PLOTTING MAXIMUM
axis_data2min = 0.0; % [ ''] DATA #2 PLOTTING MINIMUM
axis_data2max = 0.0; % [ ''] DATA #2 PLOTTING MAXIMUM
plot_data1_title = ''; % [ ''] DATA #1 NAME
plot_data1_units = ''; % [ ''] DATA #1 UNITS
plot_data2_title = ''; % [ ''] DATA #2 NAME
plot_data2_units = ''; % [ ''] DATA #2 UNITS
plot_data1_ts_n = 3; % [ 3] DATA #1 TIMESERIES DATA COLUMN
plot_data2_ts_n = 3; % [ 3] DATA #2 TIMESERIES DATA COLUMN
% *** overlay data ***
overlaydatacaco3_file = ''; % [ ''] wt% CaCO3 DATA overlay
overlaydatacaco3d13c_file = ''; % [ ''] d13C CaCO3 DATA overlay
overlaydata1_file = ''; % [ ''] #1 DATA overlay
overlaydata2_file = ''; % [ ''] #2 DATA overlay
% *** plotting refinements and other options ***
axis_Cthresh = 0.1; % [ 0.1] CaCO3 TRACER PLOTTING THRESHOLD (wt%)
opt_ashagemodel=false; % [false] ASH AGE MODEL?
opt_detagemodel=false; % [false] DET AGE MODEL?
par_ref_coln = 90; % [ 90] number of numerically-tagged levels
par_ashmaxn=1; % [ 1] Number of ash maximum to be used
par_ashoffsetn=0; % [ 1] Number of layers offset from ash peak
par_SR_mean_default = 1.0; % [ 1.0] DEFAULT SEDIMENTATION RATE
plot_axislabel_prec = 3; % [ 3] X-AXIS LABEL PRECISION
plot_datasize = 20.0; % [ 20.0] DATA POINT PLOTTING SIZE
plot_rSR = 0.85; % [ 0.85] COLOR FILL ADJUSTMENT SCALING
plot_dscrsz = 0.75; % [ 0.75] FRACTIONAL FIGURE WINDOW SIZE
% *** alternative plotting ***
plot_format_old = 'y'; % [ 'y'] 'OLD' STYLE PLOTTING
plot_format = ''; % [ ''] FORMAT OF (NEW STYLE) PLOT
opt_fatplot=false; % [false] FATTER PLOTS?
opt_minplot=false; % [false] MINIMAL PLOT?
str_plot_title = ''; % [ ''] PLOT TITLE!
str_plot_yaxis = ''; % [ ''] Y-AXIS LABEL
% *** data saving s ***
opt_save_diagnostics=false;% [false]
opt_savetimeseries=true; % [true]
%
% *********************************************************************** %