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@Boyle-Lab

The Boyle Lab

Popular repositories Loading

  1. Blacklist Blacklist Public

    Application for making ENCODE Blacklists

    C++ 334 41

  2. SEMpl SEMpl Public

    C++ implementation of the SEM algorithm

    C 16 3

  3. HMMSTR HMMSTR Public

    Python 13 3

  4. TE-Driven-CTCF-Loop-Evol TE-Driven-CTCF-Loop-Evol Public

    R 9 3

  5. TRACE TRACE Public

    TRACE: HMM for DNase footprinting and motif matching

    C 7 7

  6. F-Seq2 F-Seq2 Public

    Improving the feature density based peak caller with dynamic statistics

    Python 7 1

Repositories

Showing 10 of 41 repositories
  • Boyle-Lab.github.io Public
    Boyle-Lab/Boyle-Lab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 25, 2026
  • NanoPal-Snakemake Public

    A Snakemake version of https://github.com/WeichenZhou/NanoPal-and-Cas9-targeted-enrichment-pipelines

    Boyle-Lab/NanoPal-Snakemake’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 16, 2026
  • F-Seq2 Public

    Improving the feature density based peak caller with dynamic statistics

    Boyle-Lab/F-Seq2’s past year of commit activity
    Python 7 GPL-3.0 1 3 4 Updated Feb 2, 2026
  • HaplotagLR Public

    A tool for phasing long-read sequencing results.

    Boyle-Lab/HaplotagLR’s past year of commit activity
    Python 6 MIT 1 3 0 Updated Aug 19, 2025
  • 5-RACE Public Forked from bcrone/5-RACE
    Boyle-Lab/5-RACE’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jul 28, 2025
  • GPatch-Manuscript Public

    Data retrieval and Analysis steps for the GPatch manuscript.

    Boyle-Lab/GPatch-Manuscript’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 24, 2025
  • nanopore_guide_design Public

    Nextflow pipeline for generating, filtering, and prioritizing candidate guide RNA sequences

    Boyle-Lab/nanopore_guide_design’s past year of commit activity
    Python 1 0 0 0 Updated Apr 7, 2025
  • SEMpl Public

    C++ implementation of the SEM algorithm

    Boyle-Lab/SEMpl’s past year of commit activity
    C 16 3 0 0 Updated Dec 18, 2024
  • HMMSTR Public
    Boyle-Lab/HMMSTR’s past year of commit activity
    Python 13 MIT 3 0 0 Updated Dec 16, 2024
  • OnRamp-Web-App Public
    Boyle-Lab/OnRamp-Web-App’s past year of commit activity
    JavaScript 0 0 0 0 Updated Dec 13, 2024
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Most used topics

bioinformatics som