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@CellProfiling

CellProfiling

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  1. HPA-Cell-Segmentation HPA-Cell-Segmentation Public

    Python 95 26

  2. HPA-competition-solutions HPA-competition-solutions Public

    Team original solutions for the Human Protein Atlas image classification competition

    Jupyter Notebook 61 21

  3. pipex pipex Public

    A pipeline to transform images into valuable analysis items

    Python 18 2

  4. subcell-embed subcell-embed Public

    Codebase for training the SubCell models

    Python 18 3

  5. SingleCellProteogenomics SingleCellProteogenomics Public

    Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

    Python 14 5

  6. HPA-competition HPA-competition Public

    Human Protein Atlas image classification competition

    Jupyter Notebook 13 3

Repositories

Showing 10 of 68 repositories
  • cam_acq Public

    Python project to control microscope through client-server program.

    CellProfiling/cam_acq’s past year of commit activity
    Python 5 Apache-2.0 0 1 5 Updated Feb 16, 2026
  • camacq-plugins Public

    Plugins for camacq

    CellProfiling/camacq-plugins’s past year of commit activity
    Python 0 Apache-2.0 0 0 8 Updated Feb 16, 2026
  • subcell-embed Public

    Codebase for training the SubCell models

    CellProfiling/subcell-embed’s past year of commit activity
    Python 18 MIT 3 0 0 Updated Feb 16, 2026
  • HPA_SingleCellClassification_Analysis Public Forked from trangle1302/HPA_SingleCellClassification_Analysis

    Analysis for Kaggle Human Protein Atlas Single Cell Classification challenge and 1st place solution

    CellProfiling/HPA_SingleCellClassification_Analysis’s past year of commit activity
    Python 0 1 0 0 Updated Feb 10, 2026
  • 2D_shapespace Public Forked from trangle1302/2D_shapespace
    CellProfiling/2D_shapespace’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 10, 2026
  • SubCellPortable Public

    This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images

    CellProfiling/SubCellPortable’s past year of commit activity
    Python 5 MIT 4 0 0 Updated Feb 4, 2026
  • ellviewer Public

    Simple and configurable layered viewer, serverless and zero-code configurable

    CellProfiling/ellviewer’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 23, 2026
  • CAR-TCell-MPX-Analysis Public
    CellProfiling/CAR-TCell-MPX-Analysis’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Jan 23, 2026
  • seq2loc_benchmark Public

    Code for "A comprehensive benchmark of sequence-based subcellular localization predictors for human proteins"

    CellProfiling/seq2loc_benchmark’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 17, 2026
  • TifCs_To_HPA-PNG-JPEG Public

    FIJI plugin that reads folders with single-channel tif files and outputs an identical file system with PNGs and JPEGs in HPA-Style.

    CellProfiling/TifCs_To_HPA-PNG-JPEG’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Dec 3, 2025
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