Clinical history tweaks

nirc_ehr/resources/queries/study/drug/.qview.xml

@@ -8,9 +8,7 @@
         <column name="Id/curLocation/cage/room/floor/building"/>
         <column name="Id/curLocation/cage"/>
         <column name="date"/>
-        <column name="enddate"/>
         <column name="code"/>
-        <column name="frequency"/>
         <column name="route"/>
         <column name="volume"/>
         <column name="vol_units"/>
@@ -22,7 +20,7 @@
         <column name="dosage_units"/>
         <column name="orderedby"/>
         <column name="performedBy"/>
-        <column name="description"/>
+        <column name="category"/>
         <column name="remark"/>
     </columns>
 </customView>

nirc_ehr/resources/queries/study/drug/Behavior.qview.xml

@@ -0,0 +1,28 @@
+<customView xmlns="http://labkey.org/data/xml/queryCustomView" canOverride="true">
+    <sorts>
+        <sort column="date" descending="true"/>
+    </sorts>
+    <columns>
+        <column name="Id"/>
+        <column name="Id/Demographics/species"/>
+        <column name="Id/curLocation/cage/room/floor/building"/>
+        <column name="Id/curLocation/cage"/>
+        <column name="date"/>
+        <column name="code"/>
+        <column name="route"/>
+        <column name="volume"/>
+        <column name="vol_units"/>
+        <column name="amount"/>
+        <column name="amount_units"/>
+        <column name="concentration"/>
+        <column name="conc_units"/>
+        <column name="dosage"/>
+        <column name="dosage_units"/>
+        <column name="orderedby"/>
+        <column name="performedBy"/>
+        <column name="remark"/>
+    </columns>
+    <filters>
+        <filter column="category" operator="eq" value="Behavior"/>
+    </filters>
+</customView>

nirc_ehr/resources/reports/additionalReports.tsv

@@ -13,7 +13,8 @@ notes	Colony Management	query	Notes	true		study	notes				false	false		qcstate/pu
 activeClinTreatmentOrders	Clinical	query	Active Clinical Medication Orders	true		study	treatment_order	Clinical Active Treatment Orders		date	false	false		qcstate/publicdata	This report contains the treatment orders entered for each animal
 activeBehaviorTreatmentOrders	Behavior	query	Active Behavior Medication Orders	true		study	treatment_order	Behavior Active Treatment Orders		date	false	false		qcstate/publicdata	This report contains the treatment orders entered for each animal
 allTreatments	Clinical	query	All Treatment Orders	true		study	treatment_order				false	false		qcstate/publicdata	This report shows all treatment orders
-behTreatments	Behavior	query	All Behavior Medication Orders	true		study	treatment_order	behavior			false	false		qcstate/publicdata	This report shows all treatment orders
+behTreatments	Behavior	query	All Behavior Medication Orders	true		study	treatment_order	behavior			false	false		qcstate/publicdata	This report shows all behavior treatment orders
+behDrug	Behavior	query	Behavior Drug Administration	true		study	drug	Behavior			false	false		qcstate/publicdata	This report shows all behavior drug administrations
 FileRepository	General	js	File Repository	true		study	FileRepository				false	false		qcstate/publicdata	File Repository for uploading and viewing animal related files
 observationSchedule	Daily Reports	js	Today's Observation Schedule	true		study	observationSchedule			date	false	false		qcstate/publicdata	This report contains a list of today's treatments to be administered
 activeClinicalObservationOrders	Clinical	query	Active Clinical Observation Orders	true		study	observation_order	Active Clinical Orders		date	false	false		qcstate/publicdata	This report contains a list of today's treatments to be administered

nirc_ehr/resources/views/clinicalHistoryExport.html

@@ -0,0 +1,82 @@
+<script type="text/javascript" nonce="<%=scriptNonce%>">
+
+    Ext4.onReady(function (){
+        var webpart = <%=webpartContext%>;
+
+        var subjects = LABKEY.ActionURL.getParameterArray('subjectId');
+        if (!subjects || !subjects.length){
+            Ext4.Msg.alert('Error', 'No IDs provided');
+            return;
+        }
+
+        subjects = subjects.sort();
+
+        var hideHistory = Ext4.data.Types.BOOLEAN.convert(LABKEY.ActionURL.getParameter('hideHistory'));
+
+        var toAdd = [];
+        Ext4.each(subjects, function(s, idx){
+            toAdd.push({
+                html: '<span style="font-size: large;"><b>Animal: ' + s + '</b></span>',
+                style: 'padding-bottom: 20px;',
+                border: false
+            });
+
+
+            toAdd.push({
+                xtype: 'nirc_ehr-narrowsnapshotpanel',
+                redacted: Ext4.data.Types.BOOLEAN.convert(LABKEY.ActionURL.getParameter('redacted')),
+                hrefTarget: '_blank',
+                border: false,
+                subjectId: s
+            });
+
+            if (!hideHistory){
+                toAdd.push({
+                    html: '<b>Chronological History:</b><hr>',
+                    style: 'padding-top: 5px;',
+                    border: false
+                });
+
+                toAdd.push({
+                    xtype: LABKEY.ActionURL.getParameter('caseId') ? 'ehr-casehistorypanel' : 'ehr-clinicalhistorypanel',
+                    printMode: true,
+                    hideExportBtn: true,
+                    border: true,
+                    subjectId: s,
+                    autoLoadRecords: true,
+                    minDate: LABKEY.ActionURL.getParameter('minDate'),
+                    maxDate: LABKEY.ActionURL.getParameter('maxDate'),
+                    caseId: LABKEY.ActionURL.getParameter('caseId'),
+                    hideGridButtons: LABKEY.ActionURL.getParameter('hideGridButtons'),
+                    redacted: Ext4.data.Types.BOOLEAN.convert(LABKEY.ActionURL.getParameter('redacted')),
+                    sortMode: LABKEY.ActionURL.getParameter('sortMode'),
+                    checkedItems: LABKEY.ActionURL.getParameter('checkedItems') ? LABKEY.ActionURL.getParameter('checkedItems').split(';') : null,
+                    hrefTarget: '_blank',
+                    style: 'margin-bottom: 20px;'
+                });
+            }
+            else {
+                toAdd.push({
+                    height: 20,
+                    border: false
+                });
+            }
+
+            if (idx != (subjects.length - 1)){
+                toAdd.push({
+                    tag: 'div',
+                    border: false,
+                    cls: 'page-break'
+                });
+            }
+        }, this);
+
+        Ext4.create('Ext.panel.Panel', {
+            border: false,
+            style: 'width: 8in;',
+            cls: 'clinical-history-print',
+            bodyCls: 'clinical-history-print',
+            items: toAdd
+        }).render(webpart.wrapperDivId);
+    });
+</script>

nirc_ehr/resources/views/clinicalHistoryExport.view.xml

@@ -0,0 +1,5 @@
+<view xmlns="http://labkey.org/data/xml/view" frame="none" template="print" title="Clinical History Export">
+    <dependencies>
+        <dependency path="ehr.context" />
+    </dependencies>
+</view>

nirc_ehr/resources/web/nirc_ehr/model/sources/NIRCDefault.js

@@ -14,6 +14,10 @@ EHR.model.DataModelManager.registerMetadata('Default', {
             allowBlank: true,
             defaultValue: LABKEY.Security.currentUser.id,
             getInitialValue: function (v, rec) {
+                if (Number.isInteger(v)){
+                    return v;
+                }
+
                 return LABKEY.Security.currentUser.id;
             },
             editorConfig: {
@@ -136,6 +140,10 @@ EHR.model.DataModelManager.registerMetadata('Default', {
                     sort: 'Type,DisplayName'
                 },
                 getInitialValue: function (v, rec) {
+                    if (Number.isInteger(v)){
+                        return v;
+                    }
+
                     return LABKEY.Security.currentUser.id;
                 },
                 editorConfig: {

nirc_ehr/resources/web/nirc_ehr/nircReports.js

@@ -181,7 +181,7 @@ EHR.reports.clinicalHistory = function(panel, tab, showActionsBtn, includeAll){
             });
 
             toAdd.push({
-                xtype: 'ehr-clinicalhistorypanel',
+                xtype: 'nirc_ehr-clinicalhistorypanel',
                 border: true,
                 subjectId: s,
                 autoLoadRecords: true,

nirc_ehr/resources/web/nirc_ehr/panel/CaseHistoryPanel.js

@@ -0,0 +1,19 @@
+
+/**
+ * @cfg caseId
+ * @cfg maxGridHeight
+ * @cfg autoLoadRecords
+ */
+Ext4.define('NIRC_EHR.panel.CaseHistoryPanel', {
+    extend: 'NIRC_EHR.panel.ClinicalHistoryPanel',
+    alias: 'widget.nirc_ehr-casehistorypanel',
+
+    getStoreConfig: function(){
+        return {
+            type: 'ehr-clinicalhistorystore',
+            containerPath: this.containerPath,
+            actionName: 'getCaseHistory',
+            sorters: [{property: 'group'}, {property: 'timeString'}]
+        };
+    }
+});

nirc_ehr/resources/web/nirc_ehr/panel/ClinicalHistoryPanel.js

@@ -0,0 +1,144 @@
+
+/**
+ * @cfg subjectId
+ * @cfg minDate
+ * @cfg maxDate
+ * @cfg maxGridHeight
+ * @cfg autoLoadRecords
+ * @cfg hideExportBtn
+ * @cfg sortMode
+ * @cfg checkedItems
+ * @cfg showMaxDate
+ * @cfg redacted
+ * @cfg printMode
+ */
+Ext4.define('NIRC_EHR.panel.ClinicalHistoryPanel', {
+    extend: 'EHR.panel.ClinicalHistoryPanel',
+    alias: 'widget.nirc_ehr-clinicalhistorypanel',
+
+    showMaxDate: false,
+
+    getGridConfig: function(){
+        return {
+            xtype: 'grid',
+            border: this.printMode ? false : true,
+            minHeight: 100,
+            minWidth: this.width - 50,
+            cls: 'ldk-grid',
+            maxHeight: this.maxGridHeight,
+            height: this.gridHeight,
+            hideHeaders: true,
+            deferEmptyText: true,
+            viewConfig : {
+                emptyText: this.minDate ? 'No records found since: ' + Ext4.util.Format.date(this.minDate, LABKEY.extDefaultDateFormat): 'There are no records to display',
+                deferEmptyText: true,
+                enableTextSelection: true,
+                border: false,
+                stripeRows : true
+            },
+            columns: this.getColumnConfig(),
+            features: [this.getGroupingFeature()],
+            store: this.getStoreConfig(),
+            itemId: 'gridPanel',
+            width: this.width,
+            subjectId: this.subjectId,
+            caseId: this.caseId,
+            minDate: this.minDate,
+            maxDate: this.maxDate,
+            tbar: this.hideGridButtons ? null : {
+                border: true,
+                items: [{
+                    xtype: 'datefield',
+                    fieldLabel: 'Min Date',
+                    itemId: 'minDate',
+                    labelWidth: 80,
+                    width: 200,
+                    value: this.minDate
+                },{
+                    xtype: 'datefield',
+                    fieldLabel: 'Max Date',
+                    itemId: 'maxDate',
+                    labelWidth: 80,
+                    width: 200,
+                    hidden: this.showMaxDate,
+                    value: this.maxDate
+                },{
+                    xtype: 'button',
+                    text: 'Reload',
+                    handler: function(btn){
+                        var panel = btn.up('ehr-clinicalhistorypanel');
+                        panel.doReload();
+                    }
+                },{
+                    text: 'Show/Hide Types',
+                    scope: this,
+                    handler: function(btn){
+                        this.showFilterPanel();
+                    }
+                },{
+                    text: 'Collapse All',
+                    hidden: this.printMode,
+                    collapsed: false,
+                    handler: function(btn){
+                        var grid = btn.up('grid');
+                        var feature = grid.getView().getFeature('historyGrouping');
+
+                        if (btn.collapsed){
+                            feature.expandAll();
+                            btn.setText('Collapse All');
+                        }
+                        else {
+                            feature.collapseAll();
+                            btn.setText('Expand All')
+                        }
+
+                        btn.collapsed = !btn.collapsed;
+                    }
+                },{
+                    hidden: this.printMode,
+                    text: (this.sortMode == 'type' ? 'Group By Date' : 'Group By Type'),
+                    sortMode: this.sortMode == 'type' ? 'date' : 'type',
+                    scope: this,
+                    handler: function(btn){
+                        //toggle the button
+                        if (btn.sortMode == 'type'){
+                            btn.setText('Group By Date');
+                            btn.sortMode = 'date';
+                            this.changeMode('type');
+                        }
+                        else {
+                            btn.setText('Group By Type');
+                            btn.sortMode = 'type';
+                            this.changeMode('date');
+                        }
+                    }
+                },{
+                    text: 'Print Version',
+                    hidden: this.hideExportBtn || this.printMode,
+                    scope: this,
+                    handler: function(btn){
+                        var params = {
+                            hideGridButtons: true
+                        };
+                        if (this.subjectId)
+                            params.subjectId = [this.subjectId];
+                        if (this.caseId)
+                            params.caseId = this.caseId;
+                        if (this.minDate)
+                            params.minDate = Ext4.util.Format.date(this.minDate, LABKEY.extDefaultDateFormat);
+                        if (this.maxDate)
+                            params.maxDate = Ext4.util.Format.date(this.maxDate, LABKEY.extDefaultDateFormat);
+                        if (this.sortMode)
+                            params.sortMode = this.sortMode;
+                        if (this.checkedItems && this.checkedItems.length)
+                            params.checkedItems = this.checkedItems.join(';');
+
+                        var url = LABKEY.ActionURL.buildURL('nirc_ehr', 'clinicalHistoryExport', null, params);
+                        window.open(url, '_blank');
+                    }
+                }]
+            }
+        };
+    }
+});
+

nirc_ehr/resources/web/nirc_ehr/panel/NarrowSnapshotPanel.js

@@ -0,0 +1,37 @@
+
+Ext4.define('NIRC_EHR.panel.NarrowSnapshotPanel', {
+    extend: 'NIRC_EHR.panel.SnapshotPanel',
+    alias: 'widget.nirc_ehr-narrowsnapshotpanel',
+
+    showLocationDuration: false,
+    showExtendedInformation: true,
+
+    minWidth: 800,
+
+    initComponent: function(){
+
+        this.defaultLabelWidth = 120;
+        this.callParent();
+    },
+
+    getItems: function() {
+        var items = this.getBaseItems();
+
+        //combine the first and second columns
+        var secondCol = items[0].items[1].items[1];
+        var extended = this.getExtendedItems();
+
+        var index = items[0].items[1].items.indexOf(secondCol);
+        if (index !== -1) {
+            items[0].items[1].items = items[0].items[1].items.splice(index, 1);
+        }
+
+        items[0].items[1].items = items[0].items[1].items.concat(extended[0].items[1].items[0]);
+        items[0].items[1].items[1].items = items[0].items[1].items[1].items.concat(extended[0].items[1].items[1].items[0]);
+
+        items[0].items[1].items[0].columnWidth = 0.45;
+        items[0].items[1].items[1].columnWidth = 0.55;
+
+        return items;
+    }
+});

nirc_ehr/resources/web/nirc_ehr/window/NIRCCaseHistoryWindow.js

@@ -30,7 +30,7 @@ Ext4.define('NIRC_EHR.window.CaseHistoryWindow', {
         items[1].items[0].title = 'Entire History';
         items[1].items.splice(1, 0, {
             title: 'Case History',
-            xtype: 'ehr-casehistorypanel',
+            xtype: 'nirc_ehr-casehistorypanel',
             containerPath: this.containerPath,
             border: true,
             width: 1180,