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Pull requests: malariagen/malariagen-data-python

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Pull requests list

docs: fix pipx documentation link in contributing guide
#1119 opened Mar 14, 2026 by star-lord1234 Loading…
1
Add exploratory notebook for FASTQ-based mosquito taxon classification
#1118 opened Mar 14, 2026 by PrakharLal Loading…
1
Fix: use af1 instead of ag3 in Af1 notebook section
#1116 opened Mar 14, 2026 by star-lord1234 Loading…
1
Prevent PLINK filename collisions by hashing content-affecting selection parameters
#1114 opened Mar 14, 2026 by rehanxt5 Loading…
Add Windows development setup guide for first-time contributors
#1112 opened Mar 14, 2026 by aman-dev-maker Loading…
Docs: clarify Poetry dev install and running tests
#1111 opened Mar 13, 2026 by Pradeep18102003 Loading…
1
2
docs: document year=-1 sentinel convention for lab crosses in sample_metadata()
#1110 opened Mar 13, 2026 by sallykinyua Loading…
1
fix: replace truthiness checks with is not None in PlasmodiumDataResource._subset_genome_sequence_region
#1109 opened Mar 13, 2026 by Gopisokk Loading…
1
Fix dev dependency install flow in Poetry setup
#1107 opened Mar 12, 2026 by NayerBasim Loading…
1
Fix pipx link and update CI version statement in CONTRIBUTING.md
#1106 opened Mar 12, 2026 by NayerBasim Loading…
1
docs: document year=-1/month=-1 sentinel values for lab cross samples
#1104 opened Mar 12, 2026 by khushthecoder Loading…
1
fix: warn when sample_query returns 0 results due to case mismatch
#1103 opened Mar 12, 2026 by khushthecoder Loading…
1
1
perf: reuse cohort allele counts in pairwise_average_fst
#1102 opened Mar 11, 2026 by kshirajahere Loading…
1
fix: preserve sample_query_options during cohort normalization
#1101 opened Mar 11, 2026 by kshirajahere Loading…
1
Add DEBIAN_SETUP.md to support Debian and WSL environments (Fixes #1091)
#1099 opened Mar 11, 2026 by Schronding Loading…
1
3
Migrate dev dependencies to dependency-groups and update CONTRIBUTING.md
#1098 opened Mar 10, 2026 by Stu-ops Loading…
6 tasks done
1
9
Fix #766: handle missing terms-of-use columns gracefully
#1095 opened Mar 10, 2026 by bleedblack1 Loading…
1
1
docs: add high level API overview diagram
#1090 opened Mar 9, 2026 by Svamsi22 Loading…
1
feat: Add FASTQ-based species group detection utility (#881)
#1089 opened Mar 9, 2026 by Gopisokk Loading…
1
feat: Add user warning for empty sample metadata query (fixes #1083)
#1088 opened Mar 9, 2026 by Gopisokk Loading…
1
Adding limited support for Adar
#1086 opened Mar 9, 2026 by jonbrenas Loading…
fix: warn when sample_metadata() returns empty result due to case-sensitivity
#1084 opened Mar 9, 2026 by sallykinyua Loading…
1
1
fix: use is not None for region boundary checks in _subset_genome_sequence_region
#1082 opened Mar 9, 2026 by Carbon14-48 Loading…
docs: fix distance_sort parameter description in tree_params.py
#1081 opened Mar 9, 2026 by Carbon14-48 Loading…
Fixed lookup sample errors
#1079 opened Mar 8, 2026 by arnvptl Loading…
ProTip! What’s not been updated in a month: updated:<2026-02-14.