Closes #143 add exposure response data by jeffreyad · Pull Request #144 · pharmaverse/examples

jeffreyad · 2026-01-28T18:33:38Z

Pull Request

DESCRIPTION GOES HERE

Before you submit your pull request, take a look at the following checklist. Many thanks for your contribution!

Title: Place Closes #<insert_issue_number> at the beginning of your PR title. Use the Edit button in the top-right if you need to update.
Linked Issue: Ensure the related issue is linked in the "Development Section" on the right-hand side.
First Contribution: If this is your first contribution, add yourself to the DESCRIPTION file.
Impact on Examples: If your updates impact any examples, review locally for warnings or errors in the impacted example pages.
Merge Conflicts: Developers should address any merge conflicts and merge upon successful review.
New Packages: If new packages were used, ensure they are included in the DESCRIPTION file's Imports section.
Updated Examples: If you added or updated an example, ensure it runs on the latest CRAN release versions of all packages used.
Testing Instructions: Provide instructions on how to test the code if necessary.

Fanny-Gautier · 2026-02-17T09:37:45Z

I also don’t have much experience in this domain, but I’m happy to help review these examples, and I’m sure that, as usual, I’ll learn a lot!

Fanny-Gautier

I am not an expert in this area, but it looks good to me and I would use it as a reference when needed. It might be helpful to add a bit more detail before starting each dataset to explain what is being done and the steps performed for each of them.

adam/ader.qmd

inst/WORDLIST

adam/ader.qmd

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

bms63 · 2026-02-22T18:23:51Z

adam/ader.qmd

+covar <- adsl %>%
+  create_var_from_codelist(metacore, input_var = STUDYID, out_var = STUDYIDN) %>%
+  create_var_from_codelist(metacore, input_var = SEX, out_var = SEXN) %>%
+  create_var_from_codelist(metacore, input_var = RACE, out_var = RACEN) %>%
+  create_var_from_codelist(metacore, input_var = ETHNIC, out_var = ETHNICN) %>%
+  create_var_from_codelist(metacore, input_var = ARMCD, out_var = COHORT) %>%
+  create_var_from_codelist(metacore, input_var = ARMCD, out_var = COHORTC) %>%
+  create_var_from_codelist(metacore, input_var = ARM, out_var = ARMN) %>%
+  create_var_from_codelist(metacore, input_var = ACTARM, out_var = ACTARMN) %>%
+  create_var_from_codelist(metacore, input_var = TRT01A, out_var = TRT01AN) %>%
+  create_var_from_codelist(metacore, input_var = TRT01P, out_var = TRT01PN) %>%


Should these numeric variables already be in ADSL? Should we add them?

Just feels like a lot of extra variables - could we just show one or two and then hide that rest with some code folding?

bms63

did you want to show the ASEQ variable in this dataset view?

bms63 · 2026-02-22T18:50:13Z

I don't want to slow down the roll out of this - but is there an existing admiral function for this or can we make one??

#143 add ader

9011315

jeffreyad linked an issue Jan 28, 2026 that may be closed by this pull request

Add Exposure Response Data #143

Open

jeffreyad added 25 commits January 28, 2026 15:21

#143 update libraries and comments

0348c43

#143 add exposure metrics

d6e4b1c

143 styler

5164872

#143 edits

d077dd4

#143 update WORDLIST

b696652

merge main into branch

57dbbb7

Add intro secton with table

ec3f02f

#143 Combine ER datasets into one page

0bdff63

#143 update WORDLIST

ddbae1c

merge main into branch

1c8eb6e

#143 Add ADEE template

19f8704

#143 update WORDLIST add links

73863e1

#143 add ADES section

72613ba

#143 update WORDLIST

05d2df4

#143 start adding ADTRR

e1c5380

#143 finish adtrr script

31cd2c2

#143 spelling

cae921b

#143 styler

ad76a97

#143 update specs

1bf0e37

#143 add some prints

9acec30

#143 update specs

7099dd6

#143 add more prints

c230261

#143 update some comments

d47bb4a

#143 update conclusion add more labels

4347e8b

#143 update WORDLIST

27d14e9

jeffreyad requested review from bms63, orladoylenvs and rossfarrugia February 13, 2026 17:41

Fanny-Gautier requested changes Feb 18, 2026

View reviewed changes

jeffreyad and others added 25 commits February 18, 2026 16:05

Update adam/ader.qmd

f212696

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

7ea7965

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

7c2d1f6

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

df7c570

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

ab877b2

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

6ac62f7

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

#143 add link to spec

f459b50

Update adam/ader.qmd

9b30f56

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

bbcb46f

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

1ce09f3

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

e8768a0

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

467fbc6

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

9f29988

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

9462030

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

bb2e254

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

aacabe9

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

8352e2f

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

24247a1

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

875d230

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

Update adam/ader.qmd

1acba8d

Co-authored-by: Fanny Gautier <157114584+Fanny-Gautier@users.noreply.github.com>

#143 remove WORDLIST duplicates

b8de262

#143 add get_admiral_option throughout

4d23a64

#143 add detail

343b302

#143 add more detail for NFRLT and also add AFRLT

8e302ae

spelling

d5b3897

bms63 reviewed Feb 22, 2026

View reviewed changes

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Comments

Closes #143 add exposure response data#144

Closes #143 add exposure response data#144
jeffreyad wants to merge 51 commits intomainfrom
143-add-exposure-response-data

jeffreyad commented Jan 28, 2026 •

edited

Loading

Uh oh!

Fanny-Gautier commented Feb 17, 2026

Uh oh!

Fanny-Gautier left a comment

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

bms63 Feb 22, 2026

Uh oh!

bms63 left a comment

Uh oh!

bms63 commented Feb 22, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

Comments

Conversation

jeffreyad commented Jan 28, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Pull Request

Uh oh!

Fanny-Gautier commented Feb 17, 2026

Uh oh!

Fanny-Gautier left a comment

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

bms63 Feb 22, 2026

Choose a reason for hiding this comment

Uh oh!

bms63 left a comment

Choose a reason for hiding this comment

Uh oh!

bms63 commented Feb 22, 2026

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

jeffreyad commented Jan 28, 2026 •

edited

Loading