feat: add pipeline versioning support

[JaimeSeqLabs]

Summary

• Adds pipelines versions subcommand group (list, view, update) to manage pipeline versions
• Wires --version-id / --version-name into existing commands: pipelines view, pipelines export, pipelines update, and launch
• pipelines add gains --version-name to name the initial version on creation
• pipelines update detects when a versionable field change creates a new version: auto-generates a name (mirroring the frontend naming algorithm), assigns it, and promotes it to default. Use --allow-draft to skip auto-naming and keep the new version as an unnamed draft for manual management.
• pipelines view displays version info (name, default flag, hash) when a version is specified
• pipelines export includes the version name in the exported JSON so it survives import round-trips
• Moves pipelines labels commands into a labels/ sub-package mirroring the versions/ structure

Test plan

• ./gradlew test — all unit tests pass
• TOWER_CLI=./build/native/nativeCompile/tw ./gradlew test — all unit tests pass in binary mode
• Manual E2E testing against a Platform backend (see testing guidelines below)

Testing guidelines

Setup

export TOWER_ACCESS_TOKEN="<your-token>"
export TOWER_API_ENDPOINT="<your-platform-api-url>"

PIPELINE_NAME="AutoTest"
PIPELINE_URL="https://github.com/pditommaso/nf-sleep"

# Build the CLI native binary
./gradlew nativeCompile
TW="./build/native/nativeCompile/tw"
# when targeting localhost instance
# TW="./build/native/nativeCompile/tw --insecure"

Test 1: Create pipeline with initial version name

$TW pipelines add -n "$PIPELINE_NAME" --version-name "v1.0" "$PIPELINE_URL"

Verify: Pipeline is created successfully.

Test 2: List versions

$TW pipelines versions list -n "$PIPELINE_NAME"
$TW pipelines versions list -n "$PIPELINE_NAME" --filter "v1.0"
$TW pipelines versions list -n "$PIPELINE_NAME" --is-published
$TW pipelines versions list -n "$PIPELINE_NAME" --max 10 --offset 0

Verify: All list variants return v1.0 as the single published version.

Test 3: View version by name and by ID

$TW pipelines versions view -n "$PIPELINE_NAME" --version-name "v1.0"

VERSION_ID=$($TW -o json pipelines versions list -n "$PIPELINE_NAME" 2>/dev/null \
  | jq -r '.versions[0].id')

$TW pipelines versions view -n "$PIPELINE_NAME" --version-id "$VERSION_ID"

Verify: Both show version details (ID, name, hash, default flag, creator, timestamps).

Test 4: View pipeline with version targeting

$TW pipelines view -n "$PIPELINE_NAME" --version-name "v1.0"
$TW pipelines view -n "$PIPELINE_NAME" --version-id "$VERSION_ID"
$TW pipelines view -n "$PIPELINE_NAME"

Verify: The first two show Version Name, Version Is Default, and Version Hash rows. The third (no version) omits version info.

Test 5: Update non-versionable field (no new version)

$TW pipelines update -n "$PIPELINE_NAME" -d "Updated description"

Verify: Output says "Pipeline updated" without any new version message.

Test 6: Update versionable field (auto-names and promotes new version)

$TW pipelines update -n "$PIPELINE_NAME" --main-script "main.nf"

Verify: Output says "Pipeline updated" followed by "New version 'v1.0-1' created and set as default, available in the Launchpad." (name is derived from the current default version name).

Test 7: Confirm auto-named version appears in version list

$TW pipelines versions list -n "$PIPELINE_NAME"

Verify: Two published versions shown — v1.0 and v1.0-1 (or similar). The new one is marked as default.

Test 7b: Update versionable field with --allow-draft (keeps unnamed draft)

DRAFT_ID=$($TW -o json pipelines update -n "$PIPELINE_NAME" --main-script "main.nf" --allow-draft 2>/dev/null \
  | jq -r '.draftVersionId')
echo "Draft version ID: $DRAFT_ID"

Verify: DRAFT_ID is a non-null version ID. Output includes "New draft version created" message.

Test 8: Rename draft version

$TW pipelines versions update -n "$PIPELINE_NAME" --version-id "$DRAFT_ID" --new-name "v2.0"

Verify: Version updated successfully.

Test 9: Set version as default

$TW pipelines versions update -n "$PIPELINE_NAME" --version-name "v2.0" --set-default

Verify: Version updated successfully.

Test 10: Update a specific version by name

$TW pipelines update -n "$PIPELINE_NAME" --version-name "v1.0" -d "Non-versionable change to v1.0"

Verify: Pipeline updated without creating a new draft.

Test 11: Export with version targeting

$TW pipelines export -n "$PIPELINE_NAME" --version-name "v1.0"
$TW pipelines export -n "$PIPELINE_NAME" --version-id "$VERSION_ID"
$TW pipelines export -n "$PIPELINE_NAME"

Verify: The first two include "version": {"name": "v1.0"} in the JSON. The third (default version) omits the version field.

Test 12: Export + import round-trip

EXPORT_FILE=$(mktemp /tmp/pipeline-export-XXXXXX.json)
$TW pipelines export -n "$PIPELINE_NAME" --version-name "v1.0" "$EXPORT_FILE"
$TW pipelines import -n "${PIPELINE_NAME}_imported" "$EXPORT_FILE"
$TW pipelines view -n "${PIPELINE_NAME}_imported"
$TW pipelines delete -n "${PIPELINE_NAME}_imported"
rm -f "$EXPORT_FILE"

Verify: Imported pipeline exists and can be viewed.

Cleanup

$TW pipelines delete -n "$PIPELINE_NAME"