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Streamflow/Ro-Crate fix #145

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Merged
henricasanova merged 2 commits into from
Mar 10, 2026
Merged

Streamflow/Ro-Crate fix #145

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0c1956f
Merge branch 'main' into streamflow-ro-crate
henricasanova Mar 10, 2026
0de7615
Updated to latest streamflow commit tag
henricasanova Mar 10, 2026
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4 changes: 2 additions & 2 deletions tests/translators_loggers/Dockerfile.streamflow
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Expand Up @@ -39,9 +39,9 @@ RUN apt-get -y install stress-ng

# Streamflow
RUN apt-get -y install nodejs
RUN python3 -m pip install --break-system-packages streamflow==0.2.0.dev14
#RUN python3 -m pip install --break-system-packages streamflow==0.2.0.dev14
# For now, the above hasnt' been released yet, so we get a commit tag
#RUN git clone https://github.com/alpha-unito/streamflow.git && cd streamflow && git checkout 2295eda80ad37214d6f607f75f542b9eca03e121 && python3 -m pip install --break-system-packages .
RUN git clone https://github.com/alpha-unito/streamflow.git && cd streamflow && git checkout 4cbe9244165a81114a73f5bb2ff5067a85a5600c && python3 -m pip install --break-system-packages .

# Add wfcommons user
RUN useradd -ms /bin/bash wfcommons
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2 changes: 0 additions & 2 deletions wfcommons/wfbench/translator/templates/cwl/shell.cwl
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Expand Up @@ -15,8 +15,6 @@ arguments:
}
}
cmd = cmd + " > " + runtime.outdir + "/" + inputs.step_name + ".out 2> " + runtime.outdir + "/" + inputs.step_name + ".err";
cmd = cmd + " ; echo '-- end of stdout for " + inputs.step_name + " --' >> " + runtime.outdir + "/" + inputs.step_name + ".out";
cmd = cmd + " ; echo '-- end of stderr for " + inputs.step_name + " --' >> " + runtime.outdir + "/" + inputs.step_name + ".err";
return cmd;
}
shellQuote: false
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